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NUPACK is a growing
software suite for the analysis and design of nucleic acid
structures, devices, and systems.
The NUPACK web application enables analysis and design of the equilibrium base-pairing properties of one or more test tubes of interacting nucleic acid strands: |
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Please cite the web application and algorithms appropriately; usage statistics are an important component in helping to secure funding for NUPACK development. We are happy to provide advice and technical support. — The NUPACK Team |
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News:
The NUPACK Cloud alpha test site is live. Leverage the NUPACK
hybrid cloud scalable compute cluster and the all-new NUPACK 4 scientific code base:
1) enhanced physical models (coaxial and dangle stacking);
2) dramatic speedups (20-120x for test tube analysis);
3) increased scalability for large complexes;
4) diverse hard and soft sequence constraints for design (manuscript).
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